Convert Sdf — File To Excel

Last updated: October 2025. Methods tested with Excel 365, RDKit 2024.09, and Open Babel 3.1.1.

Sites like RebaseData provide specialized tools for uploading chemistry-based SDFs and receiving an Excel output. 2. SQL Server Compact SDF (Database File) convert sdf file to excel

suppl = Chem.SDMolSupplier('compounds.sdf') data = [] for mol in suppl: if mol is not None: # Extract properties from the SDF props = mol.GetPropsAsDict() props['SMILES'] = Chem.MolToSmiles(mol) # Generate SMILES props['MolWt'] = round(Chem.Descriptors.MolWt(mol), 2) data.append(props) Last updated: October 2025